Scaffold Ga0114982

Basic Information
Taxon OID	3300009419 Open in IMG/M
Scaffold ID	Ga0114982_1000122 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009419 Open in IMG/M

Scaffold ID

Ga0114982_1000122 Open in IMG/M

Source Dataset Name

Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	37779
Total Scaffold Genes	86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	63 (73.26%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

37779

Total Scaffold Genes

86 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

63 (73.26%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)	Depth (m)	2500
Location on Map

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Source Dataset Sampling Location

Location Name

Ohio, USA

Coordinates

Lat. (^o)

39.849

Long. (^o)

-81.036

Alt. (m)

Depth (m)

2500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F004924	Metagenome / Metatranscriptome	418	Y
F013757	Metagenome / Metatranscriptome	268	Y
F017266	Metagenome	241	Y
F032651	Metagenome / Metatranscriptome	179	Y
F036696	Metagenome	169	Y
F093757	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_100012225	F017266	GAG	MQINKRLVISTGRQMGKSYVNSLLQNWYAGLKEINPTIKWQRLPGLKLQAYTDDVAPRGFERGLRESDMDPIQAWSEECNCGKRMSFNIWNFKSEKQITMFLMKWASL*
Ga0114982_100012249	F013757	AGGA	MLTNCVAKAKLVFNKKLKCYKLIVAFNAHKRFDEAGNVKYAFPTQAKCNYVSGDLLADNLQAELASVLPSVYATLRTNSVEFVE*
Ga0114982_100012250	F036696	AGGA	MSKALNKRIANAFGKIYDNGDSGLNYMDRHEALDETLMEHFYNDTLETLSKTQLTQMADMLEQIADDMSFDLEDCF*
Ga0114982_100012251	F032651	AGGAG	VHKVTVVDIEAAGYYTSEHASGSTVKVTLQRGKAIASCDEILIWDEEYAEDCFEDWMDCALAGEAGYTYTEEA*
Ga0114982_100012252	F004924	GAGG	MRDAILAKLAEVDDMLQAATLDGDSLTEMDCFAELEGALHKLTEAVDYYVD*
Ga0114982_100012266	F093757	AGGA	MKTNREKNTEHDKKEILRVRPKQEGKYEFEPLAAVIRQWVTANEQT*
Ga0114982_100012275	F000354	AGGAG	MTKVNYDRFPSFDLNEACDHFDSEKQSNWKKIGKFIVADGQEFVNVMEKDFDFEDTGEGEYAAFEAGVRYALAKMNIALDAADLPLEVAEVDMVESMGFMLVRTDDTPESFAKRVMKKPVLMVESWVD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114982_1000122

Overview

Ecosystem & Geography

Associated Families

Sequences