Scaffold Ga0114909_1016456

Overview

Basic Information

• Taxon OID: 3300009414
• Scaffold ID: Ga0114909_1016456
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2497
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019555	Metagenome / Metatranscriptome	229	Y
F041249	Metagenome	160	Y
F068133	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114909_10164562	F041249	GAGG	MNEQELLNMTPKRRLRNATTTKFGMFGLSLGEDNYNRLDAYCKKHNLYKATLVRALVVEYLDKVEKKE*
Ga0114909_10164563	F068133	GGAG	MQLAIDVFIDMFKSKEIYIIIGSCIIMWIILERMDK*
Ga0114909_10164565	F019555	N/A	MFRIILKNKFKERKIDLSIVSRVMYHQPFTGSIQLEHITWWKRYWIKPILLEILYPKKGWITLVKVFREGKPSIRVITKLASSGKRELSITKQLYGEEVIHEQKRKKKLEQFRNKQKNMQTIDIAQSLE*