Scaffold Ga0114902_1009969

Overview

Basic Information

• Taxon OID: 3300009413
• Scaffold ID: Ga0114902_1009969
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3307
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 6.37
  • Depth (m): 2851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024653	Metagenome	205	Y
F074146	Metagenome	120	N
F090884	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114902_10099691	F024653	N/A	MKMSRDIDTIPTVRRHIVSYKIYAEWSDNPKLVEIEHEMGNFLENTFNDWLRDIEDEEDLK*
Ga0114902_10099693	F090884	AGGA	MSEYIINITEEETIQCHVCNEVFNTNEITTDDYYFAWDNIVDVDCCAECSTKENHYA*
Ga0114902_10099694	F074146	GAG	MISRGYKLTEFRNKWKTIYSKTFLNKYIPIHEDVWVDDKEFIETMKKPEGEQYIWTVLEENDTWIVTSGYHLVNRIGFIITKNKWEHDMNIEVKGY*