Scaffold Ga0117756_1068271

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0117756_1068271

Scaffold Ga0117756_1068271

Overview

Basic Information
Taxon OID	3300009408 Open in IMG/M
Scaffold ID	Ga0117756_1068271 Open in IMG/M
Source Dataset Name	Marine microbial mats from Loihi Seamount, Hawaii, USA. Combined Assembly of Gp0139187, Gp0139188, Gp0139189, Gp0139190, Gp0139191, Gp0139192
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon Health and Science University (OHSU), Western Washington University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	904
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Marine → Marine Microbial Mats From Loihi Seamount, Hawaii, Usa

Source Dataset Sampling Location
Location Name	Loihi Seamount, Hawaii, USA
Coordinates	Lat. (^o)	18.903	Long. (^o)	-155.257	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043986	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0117756_10682711	F043986	N/A	IILSLFIVLLLGGCDFKNVRHKIGFTTKPFSKNDGFENSTKMNYTIIFGVVRPKEDDD*

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