NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103753_1024490

Scaffold Ga0103753_1024490


Overview

Basic Information
Taxon OID3300009394 Open in IMG/M
Scaffold IDGa0103753_1024490 Open in IMG/M
Source Dataset NameMicrobial communities of red sea marine sponge, Stylissa carteri from the coast of Thuwal, Saudi Arabia - rep 3
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wuerzburg
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)865
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Microbial Communities Of Red Sea Marine Sponge, Stylissa Carteri From The Coast Of Thuwal, Saudi Arabia

Source Dataset Sampling Location
Location Namecoast of Thuwal, Saudi Arabia
CoordinatesLat. (o)22.23Long. (o)39.03Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017963Metagenome / Metatranscriptome237Y
F022150Metagenome / Metatranscriptome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0103753_10244902F017963GAGMAASGLVFRSDLVGTGRAISILFGINGVRNQRSHLVGPPFPEFKARFSATAGWHFSRDLTRHLLIGGCGQSRI*
Ga0103753_10244903F022150N/ARSHLVGPPFPEFKARFSATVGWHFSRDLTRRLLIGGCGQIHVFAKHG*

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