Scaffold Ga0103809_1006809

Overview

Basic Information

• Taxon OID: 3300009388
• Scaffold ID: Ga0103809_1006809
• Source Dataset Name: Metatranscriptome sequencing of an Anaerobic Hexadecane-Degrading Microbial Consortia from University of California, San Diego, USA - Hexadecane
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, San Diego
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2133
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Enrichment Culture → Metatranscriptome Sequencing Of An Anaerobic Hexadecane-degrading Microbial Consortia From University Of California, San Diego, Usa

Source Dataset Sampling Location

• Location Name: UCSD, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030143	Metagenome / Metatranscriptome	186	Y
F056343	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0103809_10068092	F030143	N/A	VSQGHDLDRLLDGYPAMVVKGFLAAAQVHRRRLLTEQVVALTVAVTGALDLALNQGKGKVLERWLEEVLGEDQGEPPLRRPKMSDRAFSFFTAMPRRNTKGKLRT*
Ga0103809_10068093	F056343	AGGAG	MPDEITDHQVLSSYLAEEQVDGFTVKPWTIKQLILVMPILDALVQEFKTQGVTLDNLGEVFEGQGLAAAKDIIQTILPRLPEFLAITLRIDREQAEELDLGLGMQLAVKVLRMNVDHLKNAFGLIMSQVGVLIGPEATS*