Scaffold Ga0118716_1242126

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0118716_1242126

Scaffold Ga0118716_1242126

Overview

Basic Information
Taxon OID	3300009370 Open in IMG/M
Scaffold ID	Ga0118716_1242126 Open in IMG/M
Source Dataset Name	Combined Assembly of Gp0127930, Gp0127931
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	800
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)		Depth (m)	200
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019030	Metagenome	232	Y
F092729	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118716_12421261	F019030	AGAAGG	VIEKQIDNGKTYDIHKSALEAIGIELVIAQREYEKQLNMHTHLITGKCELSLADEDFYKEQVEYLTGLIKHLNEVTNNELLLI*
Ga0118716_12421263	F092729	N/A	KPLYEIRTRVGTQFSKAKEANDTETIEIWERVWKAVAKEIVALHDETYEINDKENGIVKS

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