Scaffold Ga0103861_10005322

Overview

Basic Information

• Taxon OID: 3300009247
• Scaffold ID: Ga0103861_10005322
• Source Dataset Name: Microbial communities of water from Amazon river, Brazil - RCM14
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Georgia
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1491
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Amazon river
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000237	Metagenome / Metatranscriptome	1498	Y
F049674	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103861_100053221	F049674	N/A	YHPIFQGIDAVTS*G*NLVSLSGVIFSYLNFFVNRLVLPFSSVTSVIGFMLLISIVLQLLSGFYLG*YYIPEPGLVIELREEMFNDTRFGAEVFYMHIRGVDTIFVLSYMHILKKFTLKIILALNQMVEF*
Ga0103861_100053222	F000237	N/A	MTRLMVLHYFTP*YYLYLIQLHVLFCHES*DSDSGESTYEDKSGSYIS*FYDAFLKEIQDA*Y*TMFVFIYF*LHHFNPSTVNYFFFER*NISELDEIRFYGVAPH*YFRPLMGLLVISPTHYEGLM*MGLFFILLTFLPIIYN*YNVYNKHVPTIPMQNSLLQTFAFIIFMMSLYCSASMLPCGRYYYEPEGGYVGNP*VKFSYQYIYLYMA*FVHHLDLIDHYIFQFFQTFVRKCLKLYKKNINIMKNTVSKFINFSNINKNYYNLVFNNKNYNFKLKK*