Scaffold Ga0114983_1000023

Overview

Basic Information

• Taxon OID: 3300009194
• Scaffold ID: Ga0114983_1000023
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56219
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 72 (87.80%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025280	Metagenome / Metatranscriptome	202	Y
F028147	Metagenome	192	Y
F077224	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114983_100002322	F025280	GGA	MTDNTPLFAVIVGLAILTTYLIATAPKTTAQEREEMEEDWWA*
Ga0114983_100002328	F028147	AGGAG	MSTAFATISNIHPADRLGDIKAEIARLSEISKFLEAELKDLGVGAHEGNLFRATVSEVAERSSLCPKAAEAKLRELGVDGRWFSKNQKTTKGYTVLKIAARKV*
Ga0114983_100002358	F077224	GAG	MRPTSEWSPEELLRFIVGIVLSLTLTFIVATVLYSLVFVSQPMEGQSPNDAEFFKLINPIATFIVGALAGLMAGQGSGAMQKKKDEEDELPE*