Scaffold Ga0114976_10382062

Overview

Basic Information

• Taxon OID: 3300009184
• Scaffold ID: Ga0114976_10382062
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 739
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011646	Metagenome / Metatranscriptome	288	Y
F018703	Metagenome	233	Y
F103146	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114976_103820621	F018703	GGA	VGLVDRVKKRIETAKAQAVRQRNYRRARDRALARLGNDYPNVYRTYLEEEMSADEEGNKKWLDISGRTR
Ga0114976_103820622	F011646	GGAGG	MSNVLELRNGSVKRIIFYEVSDAQNIAIWGGESALEALKWYRNSPNGSKIYVQEWLTDEEDAKEVSSQIEITPIVLSTIANCMDRWV*
Ga0114976_103820624	F103146	N/A	EPRYLMGDDYALNGVEGEEEIGDAGLPDRMWEDED*