Scaffold Ga0114976_10002018

Overview

Basic Information

• Taxon OID: 3300009184
• Scaffold ID: Ga0114976_10002018
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12744
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (70.59%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F009531	Metagenome / Metatranscriptome	316	Y
F066789	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114976_1000201814	F009531	AGG	MTQQVAIYEMNYSCSPGGVDCWEATIQGYGTSTTASDFKTAGQALNWVLDRYPDEMLELVVTSLPAYEKEYA*
Ga0114976_1000201833	F066789	AGGTGG	MTCTKYGCDYQLDLDGQVTCAVCGAMDDDASTPITLDMFESQVDFE*
Ga0114976_100020187	F000684	AGG	MTLGGYTYQIGDLFTTSKTGVTGRIAGFESMSNKVTRVSLVLANGSRRLAMVKTSK*