Scaffold Ga0114974_10028094

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10028094
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3912
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F016963	Metagenome	243	N
F020510	Metagenome / Metatranscriptome	223	Y
F033352	Metagenome / Metatranscriptome	177	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1002809411	F020510	AGGCGG	VSLADLLAMFSARVIGTYTPVQYAEQVIIARANRMRWGMGQW*
Ga0114974_100280945	F033352	N/A	MTDLTKFRLIENIEVMACRNSAERVVKAVNRGDLVQAKDLARKHEIAWHLADREFQDLNQPHRNNDFCDDE*
Ga0114974_100280948	F016963	GGAGG	VIEILPQQSTQEQLLNRVRSLARELAEAKAALAAAEGRENDLIERMRPGL*
Ga0114974_100280949	F005502	GAGG	MRTLLSILALLGFTTTKLSNALIDLRPIAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGGKREWVAVDTGTAVKSKKASGGKLPVIDVFAASEKQFNAMRLPKVAMVEVIK*