Scaffold Ga0114974_10014750

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10014750
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5605
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060610	Metagenome	132	Y
F065376	Metagenome	127	Y
F079784	Metagenome	115	N
F085061	Metagenome	111	Y
F100269	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_100147501	F085061	N/A	MSPFDNIQYEFTQFNRYLDTIIDPRECENDTMEAKVKEAIIQAYSNGYHDGQKAIFDRLPKPMASGGDQGGRDYYESL*
Ga0114974_100147502	F065376	N/A	MNAANIENISEFYKALNSTEVLRAQGMIEGAPSIIEDKLSYDMSAESIKVANDAIKHIENNRKMVTIPLDQYKKSIMDVEREHIAPLKAYIEQRKAMMIDYSNELERKKAEADAKIAQDAANALKSASSSDVSDIFANFTDATTTTTLELDHTKNIRITKKAEIVGEVDWATLLWTLMQAEMFDVAELLRKLPKAMEITNITEIKGIEIVEHKTQAIR*
Ga0114974_100147504	F100269	N/A	MASVRIETFILGVVILLVFLLIKSCADNVQSDYRLKHTIYEDSIVIASQRKVIAQGSSDAAKQAQQIAELEVKVKNASEVVRIETRTVIKTQIKLGDTVMVQGKPYIQLPKPFLKNTEWYTIGGMINRLGWLQIDSLVIPAKFTYAVGDTMRTGFFNRLFRKSDQVVRLRVDNPNVAITGMDNIYIKEDKKWHQTTAFKLGVGIIMGVAITSVGKK*
Ga0114974_100147507	F060610	N/A	MDDGRDTVQITTSLDGVCVIGVGCKLHTHHHVIHLQPQVVYQSMQKFTIFGKHYCTNQWGQTYELPADEPIPEPTTMQQIYASDTIKPSTSAFLLAPKPEVKFIIKPRAEFREYQPTMDAPVMGLLLTFTIYLTAQWAWSSMPAWNNLYSELKQCLRYSS*
Ga0114974_100147508	F079784	N/A	MARKPVSKPRQVLDIVLKYWRPTIGSLVILGSVFALIFKQINTETLAAIVAAMVAAGYIPKSSDNG*