Scaffold Ga0114974_10009393

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10009393
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7119
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F007747	Metagenome / Metatranscriptome	345	Y
F016963	Metagenome	243	N
F020510	Metagenome / Metatranscriptome	223	Y
F043284	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1000939313	F043284	AGG	MKLKPIIEKLNNTRDKALELIGKTIGLASDAGVIIQQARADGQDIVAICEEAGITEEVGKRYEKVAAAQHKLANGDADPGLMRQTYLRIGFLPDPITMSEPSEPKHFLFPIMQARQWLASRGVKFISQDKGLRAQFLAEAEPIVKTYN
Ga0114974_100093933	F016963	N/A	MIEILPEQSTHEQLLNRVRSLARQLAEAKAALAASEARENDLIDRIRSGL*
Ga0114974_100093934	F005502	AGGAG	MRMLLSFIALLGFTTTKLGNALIDLRPIAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRILNGKREWVAVDTGTAVKSKKASGGKLPVVDVFAASEKQFNAMRLPKVAMVEVMK*
Ga0114974_100093936	F020510	GAGG	MSLADLLSMFSGRIIGTYTREQYANCVREARANRMRWGMGQW*
Ga0114974_100093939	F007747	AGGA	LERNQTPQKEKAQMKDLGKITFGKARPAPKQVLVDVIYDAKTAKALHAFGLKQLKKDEEAVIEYVIVKALKAFAKK*