Scaffold Ga0114974_10006440

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10006440
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8676
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004006	Metagenome / Metatranscriptome	457	Y
F005000	Metagenome / Metatranscriptome	415	Y
F018177	Metagenome / Metatranscriptome	236	Y
F033808	Metagenome / Metatranscriptome	176	Y
F071247	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1000644010	F071247	GGAG	MGSNNKIPFNPTVIKDGRIVRIRKDGSIKADLGPYKQKTQKAK*
Ga0114974_1000644012	F033808	GAGG	MEIFLFSGIAIGFLIGYPLGLFIDNLNKKENKKNGR*
Ga0114974_100064402	F005000	N/A	MYQHKQIKKFQISVNFLDDSDMIRVRNQYENLLVGKMKEQGYVRVLDIDTAFSVEFTGETWQFLMTIQGIYVGRRKAWQSEGVTQGKLIPRNTPKVTSSRS*
Ga0114974_100064406	F004006	AGGAG	MTDDVQGLVTSISLNQVLVAILEEHTKLTIPTSRFLEVSSEEKELVIDYDENNLTFTFSLRVKG*
Ga0114974_100064408	F018177	AGGA	MPSLDEFINKPEKVYKAELERIGGAKPCSKCDKDATEYFWDSVETTMSWECPDGHKNTFVVK*