NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114974_10005601

Scaffold Ga0114974_10005601


Overview

Basic Information
Taxon OID3300009183 Open in IMG/M
Scaffold IDGa0114974_10005601 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9363
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (43.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006138Metagenome / Metatranscriptome380Y
F009142Metagenome322Y
F026543Metagenome197N
F045612Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0114974_1000560111F045612N/AMKYQYTYEDFVSSLKWLCDEGYIEKFIDEDGNTCVRICEGAEDCEI*
Ga0114974_1000560114F009142N/AMSNSVQINVEDALDNILANVSGLNVYKTNRVGAKLFPFATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQEAFDAEYCSIFEAFYSEIPPLFTKIQNNIVDTKVYTARITGQTPTIRTAKRAWQRGLRMSLICTPSELEDGLRSLNFFEKENSMYVAVI*
Ga0114974_100056018F026543N/AMTEAFWGTTNIKVASAVASFGAKPRPIDPVTRTIKEDGSTQATFWFEAGAGAEARAEMERPWAEMKSDPESPIRYVRAALENRETFLGLLKRAVPIRVIQRGGQTLLISENANQEQRRAILKHL*
Ga0114974_100056019F006138GAGGMPAVTIGTTGLSFGLGAEAGIGLVQSFSEARNIEKNEVRNNQGDIVGIGYFNATTSYSLSVAITGAYNVTAGAALAALANATTLGTTRIDSITINKSNDAFVTLDISATGYPNVS*

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