Scaffold Ga0114974_10002148

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10002148
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15227
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (62.96%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F023059	Metagenome	211	Y
F045612	Metagenome	152	Y
F093506	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1000214812	F093506	AGGA	MATTIISNISSFDFEPDILTDNGRDGITSFQFSIVGGFSALNSNFSLGQQISGVPDQPPGNFKVVRRNLSHIAGDVGDGLYRVQITGEGGTGDNSLFVLETSYQYQKEIVTGFIQLPTADAPVTYICEWLSPTVTITTNNQTEDVTDVQNRAKALVASQPVQIIRNKPDKIAPVGTVQYPVFGPGIDIKSINIVGSSVENAGGLFRVRASATKGQMQIVL*
Ga0114974_1000214819	F023059	GGA	MWEAILASLAGLIGIIAWWTKNRAKTRKERDDEEIAYNRRLRDAEVDSWIHRR*
Ga0114974_1000214826	F005702	GGA	VIIFLVVFFGLLILQGVRIFAKHIDQQNYERRQFYLYVAAELDKMDKIVAEGNQPKEPKQPELLLPSKNWVGRN*
Ga0114974_100021484	F045612	GAG	MMHQYTYEDFMSSLKWLEAEGYIEKFYDSNNELCVRICEGAEDCEV*