Scaffold Ga0114974_10001072

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114974_10001072

Scaffold Ga0114974_10001072

Overview

Basic Information
Taxon OID	3300009183 Open in IMG/M
Scaffold ID	Ga0114974_10001072 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	21870
Total Scaffold Genes	57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (78.95%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F004547	Metagenome	433	Y
F004950	Metagenome	417	Y
F051928	Metagenome	143	Y
F060718	Metagenome / Metatranscriptome	132	N
F068573	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1000107211	F060718	N/A	MILLNIMNWIGLTILKFLIVALLFGAMGFSIIFMYAMQYLTQALHYVDKNVN*
Ga0114974_1000107216	F002037	GAG	MNKIYLIFIVVMAALAVWGTEKALADTTIIVSPDGTTTICTVQKNVVICS*
Ga0114974_1000107220	F068573	GGAGG	VDYKPLTQEQIIGAYSQAFPTRYEPMTINRMIQFARIIEQLHGVKHEA*
Ga0114974_1000107232	F051928	AGGAG	MRTLTDYQVRKQWRVKLHAKRCADQDQSVERYHRDAKVLNRCMSIYKIEGTKATW*
Ga0114974_1000107236	F004950	AGG	LGKGSTRRPLLISEQEAEDNWNKIFKKDYEYQLNKSTGEVEKRFLDGISKPNESQFDGDKPNAVKP*
Ga0114974_100010727	F004547	N/A	MKALAYFTVLVVFWLFLIDTPYAKDLVKEMVMVTEAGEIVLTSEECIFKKEGLQGYDYAAYATDKGHPNHEGCWKSDSYEGKHAVFIYFPEINQTAVFDAKLFHPKATI*

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