Scaffold Ga0114974_10000641

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10000641
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28770
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (73.68%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012096	Metagenome	283	Y
F013252	Metagenome	273	Y
F015062	Metagenome	257	Y
F016247	Metagenome	248	Y
F017424	Metagenome / Metatranscriptome	241	Y
F018653	Metagenome	234	Y
F037052	Metagenome	168	Y
F051683	Metagenome	143	Y
F053035	Metagenome / Metatranscriptome	141	Y
F055446	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1000064113	F051683	GAG	MILELEDDFTDDITVVNLAESYVSVSKMLKDGDSWHEDDVASWKELLPAIKLVGGWYSVDFDKEIKKAKKKK*
Ga0114974_1000064116	F016247	AGGA	MSTFIVEHRIKGNYVMETIAGVEDIDMSMYKDLIGVWVCESVEETRAMEKELQEMRHARSSQPS*
Ga0114974_1000064117	F015062	N/A	MKLKTKTKHKVCAVAPRLSDEDIDPIEQDDMDTVSSQIVEGWLPWDPEDIIDIKRLINEKMPQKQQFVVEAFLDGLNYVDVGVTEKYWRYHFSKGVEFIKKELQL*
Ga0114974_1000064120	F055446	GAG	MVKKKKNYNYYKLNVGFFPDVVKLCFDDKVFQQILKDHDVTLKANALDCGIAETHLIGDGKDAIIILVFDMSLVNDNLGELVDTIAHEVSHAVDHLAEHIGEEDNFVHETRAYLSGHLAGQIFKICMHEKEKYARKANRKIPNKTSKRDGGADVQVDQLSVGSAGPNSVSEQSVSLSGTQDANRSTVTQTNPSV*
Ga0114974_1000064133	F018653	GAG	VSQYRYILIDEFGGACRKFASKLEAQPYLTAGMRLEALPKTPKQNPYIIASLQLPEALL*
Ga0114974_100006414	F012096	AGGAGG	MSTWLIAAMGVVYFIVACDQFYKGGVGTGIMFLGYAMGNVGLVMVAK*
Ga0114974_1000064153	F013252	GAG	MADNNLQGFRQTYQETGKLSSGGGPEDKKLDAGPSGSKRPNNAVKGKPARSSKVGPGKNLKDIGGGNFY*
Ga0114974_1000064154	F017424	N/A	MRDFISEIITRTRDEQTKLADTLTAGNNVNTFEDYQRLVGRYEGFKQTLDIINEILREDEEDL*
Ga0114974_100006416	F037052	AGGTGG	VATKKLVPKFEPAMCDQMIAMGKEGASQKMMWSQLGISKTTAETWKKKYPDFGEALEIALVHAQSYWETQLLANVENKNFNSRLVEIALRGQFQQDYRETRETKIDLKAEIKVDYQKEINELLAALKT*
Ga0114974_100006419	F053035	AGGA	MMNPFELRFSIFNTAKDLMVKQHEANLAAWEVINKTSKEAADLAPKFPTTEEIIDKAIEINTFISGQTTKELATVAKKLAGVSVIF*