Scaffold Ga0114974_10000105

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10000105
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 68321
• Total Scaffold Genes: 123
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (22.76%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009145	Metagenome	322	Y
F019649	Metagenome / Metatranscriptome	228	Y
F032996	Metagenome	178	Y
F061600	Metagenome	131	Y
F091906	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1000010510	F091906	GAG	MKTTAKDFYEAIKHAGAGSLYFLVHKKDKPDEFVFEPLVLDTKDENLTIKILQRTMERPDFIAFPGTPEAYDFMNEVVDTNKK*
Ga0114974_10000105120	F032996	AGAAG	MLKEEGSKGYSVFEITNTKNGRKHFMVSSSYNEDNILSGIRTYVNSKSVGGGAKALAQDIKGAGKDYDEHFTVKQQGAGMSKEAAEKRRAELVNKAGEVYNQEIQVS*
Ga0114974_1000010541	F009145	N/A	MGTAAPKKRAMRSRRSGVKKLTLVKKNLEILNKVK*
Ga0114974_100001056	F019649	AGG	MTTGKFKKNQEKSRRKILFEEYRENNPYIPTDEEIQENNSYWDIDYLEEANAKTNKAIKYWQERYANASSNMGKWYCQIRIDRLRKKLHHYVDKK*
Ga0114974_1000010586	F061600	N/A	MTQHLNEIQVAINQILNVRSLIRHKKKTQVEKKRELFVSIITSIERIINRQDLMYAELNLDLANYDEAFLDTIDALIILYFGKEGAELIAYYLWDRVAPDGSITSLVGPDDKEVVLETAQDLWNLLLTINPLYGD*