NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114979_10140363

Scaffold Ga0114979_10140363


Overview

Basic Information
Taxon OID3300009180 Open in IMG/M
Scaffold IDGa0114979_10140363 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1482
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027758Metagenome193Y
F075658Metagenome / Metatranscriptome118N
F103146Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0114979_101403631F075658GAGGMSNVTELRNGSVKRIIFYEVSDAQNIAIWGGESALEALKWYRNSPNGSKIYVQEWLTDEE
Ga0114979_101403632F103146GGAVRERGSKPMAEPRYLMGDDYALNGVEGEEEIGDAGLPDRMWEDED*
Ga0114979_101403637F027758AGAAGGMIIDLILVSFWVFGFFFLAGGIAWLFDRLLSFHLEGMERVRKLQTREKEREGAR*

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