Scaffold Ga0073936_10024087

Overview

Basic Information

• Taxon OID: 3300009175
• Scaffold ID: Ga0073936_10024087
• Source Dataset Name: Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6497
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Finland: Lake Alinen Mustajarvi
• Coordinates
  • Lat. (^o): 61.5637
  • Long. (^o): 22.044
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012096	Metagenome	283	Y
F016499	Metagenome / Metatranscriptome	246	Y
F058718	Metagenome	134	Y
F083731	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073936_1002408710	F012096	AGGA	MSTWLIAAMGAVYFYIACEQFWKGSMGTGIMFLGYAIGNIGLVMVAK*
Ga0073936_1002408711	F058718	AGGA	MQVICYNTEFDVPDLLIDQFMKDFDGLPGGKHREGVMQIRGSIEEILDIVADDPELLYEPEYQTDFIRALAMKQALGELGILYDS*
Ga0073936_100240877	F083731	AGGAGG	VNLKQLLKHAGISNNIIKEVERKAERTNAQKEQEHQEKALAMTKMMLNDALRYRREHGDKTPPSAPKKTIIMPGDF*
Ga0073936_100240878	F016499	N/A	MTTKKPSPNKKMFTEEMAKTVLELGKKGASQKTMYAAINISKATAAKWKKEDPDFAEILDLATTYGQAFWEMMLLANIDNKAFNSRVAEVALKGQYPDDYSQRMDIKQDIKKEVVVDFNGEIAALIKALKE*