Scaffold Ga0114996_10087063

Overview

Basic Information

• Taxon OID: 3300009173
• Scaffold ID: Ga0114996_10087063
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2686
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.2588
  • Long. (^o): -156.0227
  • Depth (m): 208

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002874	Metagenome / Metatranscriptome	524	Y
F028833	Metagenome / Metatranscriptome	190	Y
F038414	Metagenome	166	Y
F072760	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114996_100870631	F028833	N/A	MSNLTYLWSNGMVDSIAKKVAEEPMENVDERPQHVIDEERGDAIRQWRKEQAQLEMFNDPVMNWSGLR*
Ga0114996_100870634	F038414	GAG	MTREEQRNNTINELYKKRTSPKTIQIQDSKTASSKAEWLHISTSEVDGEGRGTYDVGSRAMKRDRLADKKLRAKQANLR*
Ga0114996_100870637	F002874	GAG	MREEIDLSLNRSLEELESSYWEFIDATEGEDSIEWSGSVQEDISALEGYLMKMDIL*
Ga0114996_100870638	F072760	N/A	MSMEKHTLRAVKITQNIFELNRVNTELQHLKICIKVLENKKIELEDSF*