Scaffold Ga0114995_10127965

Overview

Basic Information

• Taxon OID: 3300009172
• Scaffold ID: Ga0114995_10127965
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1421
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020603	Metagenome	223	Y
F028622	Metagenome	191	Y
F092711	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114995_101279653	F092711	GGAG	MVQLEVTLTGRSKSFTADTLQDCAKQFFDEFGEASKEVVKCQTFEVNNPAEFLIVGGNESCLGYLKQMQQGAIDDK*
Ga0114995_101279654	F020603	AGGAG	MINRLLLIIFCSLFVANCSSYKPLINPESSKDKHNGNVIAGNYWKDLQACRYIHSQNTARIIKTLGISDETIFVKKCMNDYGYSILR*
Ga0114995_101279655	F028622	N/A	MKFDDDRGSLDLTKQIDELIIKIKNLDGLEKIHRETNGDLRLHIVKLEKEIYQLKRDMAFQKENHQVDIMEKDIEIGKLIKK*