Scaffold Ga0114995_10037665

Overview

Basic Information

• Taxon OID: 3300009172
• Scaffold ID: Ga0114995_10037665
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2803
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026158	Metagenome	199	Y
F047368	Metagenome	150	N
F052258	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114995_100376653	F047368	AGGAG	MPNECGAIKHAHTADEALKYLAVGNKSKGYKLKRSGVSIMVLNIEEIKDT*
Ga0114995_100376654	F026158	N/A	MEGFKDKIEMLMKAGDILDHCTRGRSTEKEARKARARSLKIWKDTGCPISQAAELGGANRTNFHKWLIREGHHTPKSK*
Ga0114995_100376655	F052258	AGGA	MKKTKQTISERKLVNSEREAESAMILFACILGGVILILLAIAMG*