Scaffold Ga0114975_10025482

Overview

Basic Information

• Taxon OID: 3300009164
• Scaffold ID: Ga0114975_10025482
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3561
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004924	Metagenome / Metatranscriptome	418	Y
F004978	Metagenome / Metatranscriptome	416	Y
F005705	Metagenome / Metatranscriptome	392	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114975_1002548210	F005705	AGGAG	VKIVIKVPKKHREHIILFCAGTPFKQKVVQSKVKYTRQPKHKGKQND*
Ga0114975_100254823	F004924	AGTAGG	LVDVLGRACYNTHIATKEHTMRDAILAKLAEVEAMLLEATLDGEQLAEMAVFEEVTGALNTLTEAVDYYVD*
Ga0114975_100254826	F004978	N/A	MVEHTMITADTLKTLTSFTALALTRAAMDSGYNGPMFTGAKFIGITNGGQFCYTVTFQVKGGTDSTKIFLTYDHAEDRVIADYHLTETF*