Scaffold Ga0114975_10000669

Overview

Basic Information

• Taxon OID: 3300009164
• Scaffold ID: Ga0114975_10000669
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25624
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (66.67%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F002245	Metagenome / Metatranscriptome	578	Y
F002489	Metagenome / Metatranscriptome	554	Y
F003379	Metagenome / Metatranscriptome	490	Y
F005531	Metagenome / Metatranscriptome	397	Y
F011299	Metagenome / Metatranscriptome	292	Y
F017133	Metagenome / Metatranscriptome	242	Y
F017134	Metagenome / Metatranscriptome	242	Y
F030095	Metagenome / Metatranscriptome	186	N
F051930	Metagenome / Metatranscriptome	143	Y
F076101	Metagenome / Metatranscriptome	118	Y
F085708	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114975_1000066913	F030095	AGG	VAAQKNFEVDQNTTFTFEVQYLDEDQTPIQLNHHTAKLQVRDTQGGKKLAFTLTENDGIVISPTEGKLKISISADRTNKMFYPKSAYDLILIDPSVNKTRLLEGYMTLSRSVTV*
Ga0114975_1000066918	F051930	N/A	MSEEGLVEKLLCPVDQSLLFCNQDLEDNISLYCLECEYKKNIGLSTYQNIVKLVEENINVQ*
Ga0114975_1000066920	F002489	GAG	MQEDLNKEVSSNLEDNLPMVNYIMLHRMYDLLTLISNKIVGSEDTQKMIEYHEAGYLLGPAPSFTPGEEE*
Ga0114975_1000066926	F003379	AGGA	MKKLYALVSTIAIAILSGVALSKFLNWAGTVEIFDFDLNENIDHEEF*
Ga0114975_1000066930	F017133	AGGAG	MTNSMYERARGFASVSDYPKGMMNLCPCGQVVLAPSNYHEGFPWWDNPNQCKEMWDNSHSA*
Ga0114975_1000066932	F000447	GAGG	MGYIEIFRMNEEGAGWVDLADATPSELLDIEIGLLQEGAI*
Ga0114975_1000066933	F005531	GGAG	MTITYSLWQGSQLLSVNNKASKPEEILAVIEELNKLGKGFTFNVREVDTSK*
Ga0114975_1000066934	F085708	GGA	MNRLLTSLVQIAIGIPALYMGRIVLREIVSDFREWSKSH*
Ga0114975_1000066938	F076101	GGAG	MYKLTLSYDGNAPHWQQDYESEFDAWKDFFAFVDWGFANEYSTVNLYNSEMKCFTRHFYREDRKVVTVK*
Ga0114975_1000066939	F011299	AGG	MTMTRKHFEAIAEILKYNSNKTHPAVFSKMVLDFAELCANENPNFNVNKFHEASGYVVPKFSSR*
Ga0114975_1000066940	F017134	N/A	MSVRSVIILSTTNERPLMDNFTVACLNYEICGATTTFFDEAEYEIYGDDYMCAECYDSEEMEFYETAGWADSDALASAGHGMDEDY*
Ga0114975_1000066943	F002245	N/A	MKVPHTIEFEAVIDLDKIPASLLPRLLTMDTSLITEMCKGATAHALAMSNTLTVANENNYWAELTIKENN*