Scaffold Ga0114975_10000499

Overview

Basic Information

• Taxon OID: 3300009164
• Scaffold ID: Ga0114975_10000499
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29659
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (61.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007163	Metagenome / Metatranscriptome	356	Y
F009605	Metagenome / Metatranscriptome	315	Y
F028806	Metagenome	190	Y
F075746	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114975_100004992	F009605	AGGA	MKTIINSIWSFLEAFGQARAAASLARQGRVAEAKAVYGA*
Ga0114975_1000049921	F028806	N/A	MNKYNDFPEQPRIMSNAEGEQHYKNMLAQIAEFKPTEIVAVARSGFSYAMWVAQELKLPLGAYWPNLSDMFNTQDPERIVFVDDNILQGTTYKATKEYMTKYYPNVEWRWAVLFSDWHTPEQVRNEIIQGTRLPYFAEEPMWGSRKISADYGVRYRDE*
Ga0114975_1000049931	F007163	AGGA	MTLEDLQYIFEYQIEEGTEKLYFMTTDGDRHPLIQRHPAGDLAGLLPMLDSFQYTGHNVMPRFVK*
Ga0114975_1000049933	F075746	GGAG	MTIFIPVLFICLNGNCEFMQAKTYYKNEAQCRASLDVQKQHMRNLVEKAAEQGTKGEITILEGTCIDAEIKTTQGRTT*