Scaffold Ga0114966_10190495

Overview

Basic Information

• Taxon OID: 3300009161
• Scaffold ID: Ga0114966_10190495
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1306
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F002598	Metagenome / Metatranscriptome	544	Y
F006744	Metagenome / Metatranscriptome	365	Y
F076101	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114966_101904951	F002598	N/A	KKVPLMATKLYTIEGLLIGKNYRSNSRHFEGEIINATPRPEIWYGEKTEAYLIEINTRSLRNKFATIAVKVGE*
Ga0114966_101904953	F000447	AGGA	MGFIEFARINDEGVSWVDLAEATPDELFNIEIGLLNEGAFE*
Ga0114966_101904954	F006744	AGGAG	MNLDEFKAHITATRQASKAEALSVLSATITKSTNERENLNG*
Ga0114966_101904957	F076101	GGA	MYKITLSYDGNAPHWQGDYYDEMEAWSAFFKFTDWGFADEFSTVNIYTPELKCYTKNFYRSGMVVTK*