Basic Information | |
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Taxon OID | 3300009161 Open in IMG/M |
Scaffold ID | Ga0114966_10190495 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1306 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000447 | Metagenome / Metatranscriptome | 1128 | Y |
F002598 | Metagenome / Metatranscriptome | 544 | Y |
F006744 | Metagenome / Metatranscriptome | 365 | Y |
F076101 | Metagenome / Metatranscriptome | 118 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114966_101904951 | F002598 | N/A | KKVPLMATKLYTIEGLLIGKNYRSNSRHFEGEIINATPRPEIWYGEKTEAYLIEINTRSLRNKFATIAVKVGE* |
Ga0114966_101904953 | F000447 | AGGA | MGFIEFARINDEGVSWVDLAEATPDELFNIEIGLLNEGAFE* |
Ga0114966_101904954 | F006744 | AGGAG | MNLDEFKAHITATRQASKAEALSVLSATITKSTNERENLNG* |
Ga0114966_101904957 | F076101 | GGA | MYKITLSYDGNAPHWQGDYYDEMEAWSAFFKFTDWGFADEFSTVNIYTPELKCYTKNFYRSGMVVTK* |
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