Scaffold Ga0114978_10012388

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10012388
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6522
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027512	Metagenome	194	Y
F029657	Metagenome	187	N
F029746	Metagenome	187	N
F091345	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1001238810	F027512	N/A	MNEQIEEFLRMYGDRLPNPEHCPKEFEYYVKLYKYIKGLE*
Ga0114978_1001238812	F091345	GAG	MKTIQQQETEAILSMVELIKTLEQQLSNAKDRIKELENNQKESEYVQLKSHYE*
Ga0114978_1001238813	F029746	AGGAG	LNKNFWGPADDEESLPEWMDPKTYSNPKPKRSGPSLMDHKRTSLMESIQEAMRKPPVPVIIDKPSIQNENDTTTRN*
Ga0114978_100123886	F029657	AGGAG	MKATCKPCITIRTFFFLLRKNYNQFRKELKDYSYINQISCEMPKYKAPKTIDEGMAELKRLREVAKKNYSKEKEEELLKSVVQ*