Scaffold Ga0114978_10009389

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10009389
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7604
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006060	Metagenome / Metatranscriptome	382	Y
F050890	Metagenome	144	Y
F068426	Metagenome	124	Y
F083677	Metagenome	112	Y
F083691	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000938911	F068426	AGG	MNTWDFVIKELKSLQQEYPDPQPIVELYVEQILLKGYKVIK*
Ga0114978_1000938915	F006060	AGG	MLKFEGIATVGDIIRAYDFKPCAGRDDAFIEGVVIDANSYESGFSSYKIKVTVDKFKKYETKVSARNRVEQIAFVPHQTSFMEFDFRVINLSKV*
Ga0114978_100093894	F083691	GGTGG	MGISAYKEVTEWDNSEFVVPNHTYLFDGKSNILAYAKASNDELVILHKPLPVDTRRRKFIKVKHDALDAYGATVVIDVPNLENTPHWSVKSDSGKTYTVTLESGKYQCNCIGYAYRGKCKHSESVASAQQS*
Ga0114978_100093897	F050890	AGGA	MSYDSDFENVYMVEFQSGRIIHVGQYTVEDVKEYCADEHEGEVIKSIYEEVYTNDGEDDEENE*
Ga0114978_100093898	F083677	GGA	MSYFDGMSVDDLQSYYSDFHKDYFGYRPRSSTPEQWRDRDWLIEQINGIHNAMDEMKKTYSGRELLRAEGWHLDEKDFV*