Scaffold Ga0114978_10008678

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10008678
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7959
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (91.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F003965	Metagenome / Metatranscriptome	459	Y
F011487	Metagenome / Metatranscriptome	290	Y
F039631	Metagenome / Metatranscriptome	163	Y
F095473	Metagenome	105	N
F099300	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000867813	F099300	AGG	MGVMKELHLDITTCDLCYGVGWLYFGNGIDFDTESCDCNPHQLFITKENN*
Ga0114978_1000867820	F003965	AGG	MTQLITVCKEHTPNKIGISEYQDTQFTFCEICENNIERWYNDTDPERLPMWTDWKISK*
Ga0114978_1000867822	F039631	AGGTGG	MTTLDKNYIKSATYGHMTLNQRIALAAEKVANGEVVSFRGASVTTYAKVMRLANRIKQEREFPQCPCEECN*
Ga0114978_1000867823	F095473	N/A	MTCQVINCESTELVYSGTDAFMLGITTEAYCYKCANAYAQIDRAMQKVREEYLSQVSASSLTTSD*
Ga0114978_100086784	F011487	AGGAG	MNYENDELYDEYYSTVCPTCKENSVDEYEEKCTHCLLEEMSVTYNEDIALEMSLGLDY*
Ga0114978_100086786	F000447	AGG	MGFIEFARINEEGVSWVDLSEATPNELLDLEIGLFQEGAI*