Scaffold Ga0114978_10006427

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10006427
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9324
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010817	Metagenome / Metatranscriptome	298	Y
F014229	Metagenome / Metatranscriptome	264	Y
F028084	Metagenome / Metatranscriptome	192	Y
F091423	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_100064271	F014229	N/A	TTNTGKVDVATSVENTLPYVKPAVVLACTVVLDQAVSGNDRIEKAKMINHVAAIVEGLTAGNTPTPEQLQKALNDYLPAEKTHWANYVTVIKDLYAQQFARLNGNGALAVKVLNAIASGCKDATASYVE*
Ga0114978_100064272	F091423	GAG	MPTGILQALLSAVSGIFAAINNVFGAKNTKEMKDRQEAQKEVDHQSGIEHAVKDKDLEQARKHISS*
Ga0114978_100064273	F010817	GGA	VTPNKIQDDKSSYDATTPKQYDKDNGGLISFVGDDALITRQARERYNNLIKMYRIKFKKEKAIDLTEDAGITPYKDNFGNELFLISSEHLVYFGVLNSWLKEKVPADNIIDKTIDKINN*
Ga0114978_100064276	F028084	N/A	MKKLILILPLFLLISCSEQNIDSRELPTKYPETPTMGSADDVSKELYKK*