Basic Information | |
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Taxon OID | 3300009159 Open in IMG/M |
Scaffold ID | Ga0114978_10002606 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14860 |
Total Scaffold Genes | 38 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (76.32%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F026557 | Metagenome / Metatranscriptome | 197 | Y |
F029107 | Metagenome / Metatranscriptome | 189 | Y |
F051126 | Metagenome / Metatranscriptome | 144 | Y |
F071231 | Metagenome / Metatranscriptome | 122 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114978_1000260610 | F051126 | AGG | MSAKPYTIQDLLIGKTYRSTNRHDEGVIQYATPRPEIWYGSEFEAYAIEVRSTRGIKNFWATVAVKVGG* |
Ga0114978_1000260630 | F029107 | N/A | MTLHAHTTLSNTTATRLSPNGLHSGMDITIQNIHESAYVYVGGEGVTASGYGYRIAPGAAFSIELPGQDALYAISTVNSSKVAILQTGLEG* |
Ga0114978_100026067 | F071231 | AGGTGG | MMTRKDYVATAEILSNYFATSVFDEQGEILFADLVDEFSLMFETDNERFDANRFAIACYKELEMSK* |
Ga0114978_100026069 | F026557 | AGGTGG | MINSVLTIPCEECHSTGLIFFGNGNDFDVETCVCDFGMEQDLNLFNTPESN* |
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