Scaffold Ga0114978_10002606

Overview

Basic Information

• Taxon OID: 3300009159
• Scaffold ID: Ga0114978_10002606
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14860
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (76.32%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026557	Metagenome / Metatranscriptome	197	Y
F029107	Metagenome / Metatranscriptome	189	Y
F051126	Metagenome / Metatranscriptome	144	Y
F071231	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000260610	F051126	AGG	MSAKPYTIQDLLIGKTYRSTNRHDEGVIQYATPRPEIWYGSEFEAYAIEVRSTRGIKNFWATVAVKVGG*
Ga0114978_1000260630	F029107	N/A	MTLHAHTTLSNTTATRLSPNGLHSGMDITIQNIHESAYVYVGGEGVTASGYGYRIAPGAAFSIELPGQDALYAISTVNSSKVAILQTGLEG*
Ga0114978_100026067	F071231	AGGTGG	MMTRKDYVATAEILSNYFATSVFDEQGEILFADLVDEFSLMFETDNERFDANRFAIACYKELEMSK*
Ga0114978_100026069	F026557	AGGTGG	MINSVLTIPCEECHSTGLIFFGNGNDFDVETCVCDFGMEQDLNLFNTPESN*