NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114978_10002292

Scaffold Ga0114978_10002292


Overview

Basic Information
Taxon OID3300009159 Open in IMG/M
Scaffold IDGa0114978_10002292 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15755
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007029Metagenome / Metatranscriptome359Y
F015095Metagenome / Metatranscriptome257Y
F029049Metagenome / Metatranscriptome189Y
F068843Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0114978_1000229216F015095AGGMEQAQLIVGIAVGGCTFLGLWAGLIRKMVKYYLSELKPDGNGGHNLAGRVERIEARVDRIYEILLEDRLAK*
Ga0114978_1000229218F007029GAGGMSNFLAGYEDVNARIKRFRSEFPSGRLVAYIEDIDVIKGTILVKAEAYREYEDMQPSAVDYAFGNVSTYPNNMKKWFIEDTITSAYGRVIGLLTPSLEHNARPTAQDMQKVDTLPADSDPWSTKASIEDMATMASSLLEIGAQLGNELVPEGPRCSHGTMIWAEGTAKATGKPWAAYKCTERVRANQCNPIWHVMTSTGQWKPQV*
Ga0114978_1000229220F029049GAGMVMRTMSRVAKVILDRSQEITAHRVGLERTVLRNADPKDASNFGQTYSNWHELVWQEAEGCGAEMAVANFFGDYAYVPQVDNAHDTADVGENIEVKWTKHANGHLILQNRGAGRPNDVAILVTGLSPVYILMGWMPVHMAKQAKYKHPYQNNYWVPRSNLFEMQYLKRSNYGL*
Ga0114978_100022926F068843GGAGMSLTEEEIAFLIKIGQITEAPKKENKSKDTPTDKDEE*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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