NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114978_10000005

Scaffold Ga0114978_10000005


Overview

Basic Information
Taxon OID3300009159 Open in IMG/M
Scaffold IDGa0114978_10000005 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)179875
Total Scaffold Genes173 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)111 (64.16%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001957Metagenome / Metatranscriptome611Y
F034930Metagenome / Metatranscriptome173Y
F038097Metagenome166Y
F048781Metagenome / Metatranscriptome147Y
F051136Metagenome / Metatranscriptome144Y
F071245Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0114978_10000005110F034930GAGMKEFVIKDSAAFRLRVKMWKCLNPSDLNSIEFIQECKDEKGEVNFSSTYNYFLTDEDIKAMVDGFSK*
Ga0114978_10000005116F038097N/AMKYITNITGEIKLPWEPGLLEWLQEQYPYSKYRVVEEHQDEEISQLVG*
Ga0114978_1000000540F071245GGAMSPSDNEVIVDWTPTRGDQWWNETCAMVLEVFGLPGQKFVYTPSTDFMTFTFKDKRDAFMCRILLSDRI*
Ga0114978_1000000543F001957GGAGGMNSAEKANNIIFRAKHISEFTVITELPEGFQFNGRVPFDIDISDNTLEAKVWAMDFDEAVKILDEYLESCK*
Ga0114978_1000000547F048781N/AMSGWNTITRVRRLEDQVDKLGFKFKSPRHGDWEQQERSLALVPKDADALPIYSRDAELFVGTLEGLETWLHGVRWAREYDMMLRLSDEKKRARKEQDERNRILLKTIKDSKIPNRIKT*
Ga0114978_1000000551F051136GAGGMNMTDKDWLERVTIAYRAYPYPSKDLETFIHWLYNQYGIVEPKKENDD*
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Institute for Fundamental Biomedical Research
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