Scaffold Ga0114977_10019597

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10019597
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4251
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006985	Metagenome / Metatranscriptome	360	Y
F035668	Metagenome / Metatranscriptome	171	Y
F068428	Metagenome	124	Y
F077016	Metagenome	117	Y
F102815	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_100195971	F006985	N/A	MIREVCSCGAEFETDDREAIELIKSWRRTHKHSDKPSKPDSRDSSTLTDTQVALGFQAIYDPLKDDLE*
Ga0114977_1001959712	F077016	GGAG	VPTSAENVREYYRKQGEQREHARLIQLLKEQNVIRNCGATGKLVFVNCNTLEVVYLKEIADE*
Ga0114977_1001959714	F102815	AGGTGG	MRNTEELFLDAVNAYKAWVATGKDFVNHADLFDVWDDAVTAYGQAVFLERNRAVHQVLQGLEIVK*
Ga0114977_100195974	F068428	GAG	MLEDLELPKRQTSCRIRTIKSELSEKDAVIFEQAVLNPEWPYKTLSNELYKRGTKVSDAAIKHHRERRCSCWKD*
Ga0114977_100195978	F035668	N/A	VNAINVFSKDYKAGKSEGQRAEATRTAEALIELERAGVIENHQMQAILDLILEKLTDVMDIP*