Scaffold Ga0114977_10014434

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10014434
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4986
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018914	Metagenome	232	N
F026545	Metagenome	197	N
F066571	Metagenome	126	N
F088791	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1001443410	F018914	AGGAGG	MAKAQDKFTVLRGWVADAQVMLGVDSWELTIVEAASDVDAWADIDPHAQAPTADLRVSHDFWTQTPEKQRLILTHELLHLVLARYARVSETMEESLGKLAWSVLEPQLEDAEERATEHLARIIAPYLSLPNFPKA*
Ga0114977_100144344	F026545	GGAGG	MAGVKTKRAGAAKAPVWTVTDCTECGKVIDYTDPKRLVFPAQRVLVIHEKGRRFEWRHKGCVK*
Ga0114977_100144348	F088791	N/A	MPQFGKSVHWARERYYGGTFVTDADIFWVKSRIEDEADDSLIAKLHRYTAAVDLMCRVCAGEDDKTPTCWDQTCPLRSCSPLPLRNPK*
Ga0114977_100144349	F066571	AGGA	MRYALWATARPFGVLLSLALPVESSHRQGLTWGSADACTTITAIAGQQRTSGATPLLLHHYRRANG*