Scaffold Ga0114977_10012876

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10012876
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5289
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F012975	Metagenome / Metatranscriptome	275	Y
F037227	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1001287611	F000473	N/A	VEEVKEMTFIDKSKNHFKFGVNEWNGEPNKPVFYNDEMRKKVREIPKPTYDLLMDVVMYPEFLALRLYEDNFLQFDGNKKEMVIDYVSKVKRLIESYGVRCELEGAPSERLL*
Ga0114977_1001287613	F012975	AGGA	MLYLTLKGVEVFMDKSKTKSQESFWNNYDLVIWKKDSGGYTDIKGMFRKDSWGTAETISVNNHGIWKLPLKYVKHFR*
Ga0114977_100128764	F037227	GAGG	MDKVTVLEGIIDDVATELYQKLWNAIPVEEQTEDSSRAIGLNSRETTIFVIQSFMNKFNDAAEDLKDK*
Ga0114977_100128769	F000671	GAGG	MEKILCYSCNKTKNQLNVRRSSLLPINLLMCETCISSKFEPRWVIIVAGRQDGSETVRDFVLKKRYIGKDISASELLV*