Scaffold Ga0114977_10011335

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10011335
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5652
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006060	Metagenome / Metatranscriptome	382	Y
F050890	Metagenome	144	Y
F068426	Metagenome	124	Y
F083677	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1001133511	F006060	AGAAGG	MLKFEGIATVGDIIRAYDFKPMAGRDDAFIEGVVIDANSHESGFSSYKIKVTVDKFKKYETKVTARNRVDQYAFVPHQTSFMEFDFRVVNLSKV*
Ga0114977_1001133512	F068426	AGGA	VNDRNRWKFVITELTALQRGFEDPQPIAELYVERILLCGYNITKSKDQVYHA*
Ga0114977_100113353	F050890	AGGA	MSYDSDFERVYMVEFQSGRVIHIGQYTVQDVLEYCADEHESEVIKSIYEEVYTGERY*
Ga0114977_100113354	F083677	AGGA	MSYFDGMSVDELQSYYSDFHKDYFGYRPRSSTPEQWVNRDWLIEQINAIHNAMDEMKKTYGGREQLRAEGWHLDEKDFV*