Scaffold Ga0114977

Basic Information
Taxon OID	3300009158 Open in IMG/M
Scaffold ID	Ga0114977_10010213 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009158 Open in IMG/M

Scaffold ID

Ga0114977_10010213 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5949
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (77.78%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

5949

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (77.78%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006618	Metagenome	368	Y
F006842	Metagenome	363	Y
F024719	Metagenome / Metatranscriptome	204	Y
F029021	Metagenome	189	Y
F037113	Metagenome / Metatranscriptome	168	Y
F048091	Metagenome	148	Y
F067515	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1001021310	F006618	GAGG	MSKIKQHLEKQIVIKGKEHEETGWKRYIYFEYEGNEYELTLFYDEFTGYDTFWRVPERTPDWVVEWDSEAHEGMSFTHYLDDLTWESA*
Ga0114977_1001021311	F037113	GGAG	MTWTVWVGGSEINWQHYSHKIDAERVAEFWREVKGYDDVIVEKVAK*
Ga0114977_1001021312	F006842	AGAAGG	MKATPVICGDHLVPISECDCVNYLQELKTSAERLVQLTREREELTK*
Ga0114977_1001021314	F029021	GAGG	MKELCQFCGWEIARVDWYHRYNGKLICDNCVMDTMNEREKEASK*
Ga0114977_1001021316	F024719	N/A	MGEVVELPSRGKITVVFYEVSDSQGIAIWGGENPVEALKWYRNSPAGSKIWVSQYEVDEEDAELMLDSVEITPIVLATITDSIDRWSR*
Ga0114977_100102133	F067515	GAGG	MKYSITNETLKSRAQDIQKEFENGGASWEGVALEIARLELSLEAIKKDGLGEEIGIDLGTWDGHYCASEEDITHYDPKCCDHDYEFGCPCCGNECDNCYQEENTKTI*
Ga0114977_100102138	F048091	GAGG	MIEHHFIIKYSKEGGWEWDTDSEELRYSDGTVWNEESESWSVGYVGWDKEKGEAEYLDDDDLIGEQLGAILEVANSASKVI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114977_10010213

Overview

Ecosystem & Geography

Associated Families

Sequences