Scaffold Ga0114977_10003088

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10003088
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10689
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000376	Metagenome / Metatranscriptome	1216	Y
F008245	Metagenome / Metatranscriptome	336	N
F038675	Metagenome / Metatranscriptome	165	Y
F086844	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_100030881	F086844	N/A	TEVLEAIRKNKGSQEVVEEMADIIIRLLDLYAAMRNAAFIEDSLDEMLYKKMEVNNDRPRLHGNLF*
Ga0114977_1000308812	F038675	AGG	MKFYQSKEWLYRRYVVQKKTVTEIGKECDVSAMTIQRYLEQFGLIKKR*
Ga0114977_1000308818	F000376	GGA	MSTYQEKAKECKCCGKHVPLPTILKEYEGITVCPTTFANIAEYKRIWLAHGSRPSGSIRKHFSDFVQQIVEASNVK*
Ga0114977_100030888	F008245	GAGG	MVEDKNTLELISDITEFNDLHEFMKDEHLDKALAIVVKLLMNPDVPSAKSPMLIMELQAMSTKFAVLASYYSTIAKDKAGTANNNKKNVYYSLKESIDKLVDALKYVVRYN*