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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009158 Open in IMG/M |
| Scaffold ID | Ga0114977_10001458 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15554 |
| Total Scaffold Genes | 35 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (82.86%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020883 | Metagenome | 221 | Y |
| F036663 | Metagenome / Metatranscriptome | 169 | N |
| F053803 | Metagenome | 140 | N |
| F064418 | Metagenome / Metatranscriptome | 128 | N |
| F070030 | Metagenome / Metatranscriptome | 123 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114977_1000145818 | F064418 | N/A | MGKPRPTEIKLVAKLLDPDTENSEDATDLAIEIIEALDNSRLKRESFIVVARLTDWSPLQAWGEFNTRLQAEKFFPHLASPSPSGGKGSIAKLVNPDEFLKMIGDK* |
| Ga0114977_1000145819 | F070030 | AGGAGG | MIHLASVVLICAYCNSEIERTTELAAREALAEHQQYVQCIKNY* |
| Ga0114977_100014582 | F036663 | AGAAG | LIEKYLSLVQPEERSPLVTQVRVALNVAGDDRLDAPLQEILKGLQRRYDIPAVGCINIATLDALAVAPPEW* |
| Ga0114977_1000145825 | F020883 | GAGG | MNASFRIEQVNFLLSQYREATHRPAMLDLAIWQTLETYYTQPDDWNIVITSTREEAFDRMVKDGWTVNMGDHFFGLDYETIDELVLEYLKNNQLVTNIEEE* |
| Ga0114977_100014587 | F053803 | N/A | MAIDIELTEDEIMDALRFVHRVRENKKQYEVVDKKFDKNNSSYSVNLMGQLGEVACGKGLGLEVDRSISPSGDNGHDLSTSLGKNIQVKTSTLDKLIFNAPELFVSDYAVLVQFFGDKQIPHVDSKFTIVGWVTRELFLANHYKHDYGYGIRLVMDANQLLPMEDLINELSRLQSSSVQGSRS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |