Basic Information | |
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Taxon OID | 3300009158 Open in IMG/M |
Scaffold ID | Ga0114977_10001458 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15554 |
Total Scaffold Genes | 35 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (82.86%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F020883 | Metagenome | 221 | Y |
F036663 | Metagenome / Metatranscriptome | 169 | N |
F053803 | Metagenome | 140 | N |
F064418 | Metagenome / Metatranscriptome | 128 | N |
F070030 | Metagenome / Metatranscriptome | 123 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114977_1000145818 | F064418 | N/A | MGKPRPTEIKLVAKLLDPDTENSEDATDLAIEIIEALDNSRLKRESFIVVARLTDWSPLQAWGEFNTRLQAEKFFPHLASPSPSGGKGSIAKLVNPDEFLKMIGDK* |
Ga0114977_1000145819 | F070030 | AGGAGG | MIHLASVVLICAYCNSEIERTTELAAREALAEHQQYVQCIKNY* |
Ga0114977_100014582 | F036663 | AGAAG | LIEKYLSLVQPEERSPLVTQVRVALNVAGDDRLDAPLQEILKGLQRRYDIPAVGCINIATLDALAVAPPEW* |
Ga0114977_1000145825 | F020883 | GAGG | MNASFRIEQVNFLLSQYREATHRPAMLDLAIWQTLETYYTQPDDWNIVITSTREEAFDRMVKDGWTVNMGDHFFGLDYETIDELVLEYLKNNQLVTNIEEE* |
Ga0114977_100014587 | F053803 | N/A | MAIDIELTEDEIMDALRFVHRVRENKKQYEVVDKKFDKNNSSYSVNLMGQLGEVACGKGLGLEVDRSISPSGDNGHDLSTSLGKNIQVKTSTLDKLIFNAPELFVSDYAVLVQFFGDKQIPHVDSKFTIVGWVTRELFLANHYKHDYGYGIRLVMDANQLLPMEDLINELSRLQSSSVQGSRS* |
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