Scaffold Ga0114977_10000149

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10000149
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44811
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (55.84%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021106	Metagenome	220	Y
F073562	Metagenome	120	N
F074569	Metagenome / Metatranscriptome	119	Y
F093879	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1000014911	F021106	AGG	MSGWNIITQIRSIEQRADLLGMKLAPYKHDARYGDNVALIPKDNDALPIYTRDAVLFAGSLEGAGQWMQGVLWAREYDRMNTDRNLDKKRERKEQDERNIQMVRILKEEKLSLVPND*
Ga0114977_1000014917	F093879	N/A	MTHPLVGRSYTFEDGNRMEIIQVREQDEHRGGASVTYLAYQGPGIPQKLVLNLEQFIDIYGQLFE*
Ga0114977_1000014933	F074569	AGG	MKEQLLALAYEQEDEFGSSDRDEFDCLIALIEDGTINTFEELAKYGVEK*
Ga0114977_1000014970	F073562	GAGG	VATKIEREFAFQAAVHFEGYFLMTVYELSLGMEVDTASIKEQNIAMDRITYFLTECLENSVFVEHTDKKAIEKYLQADIKVCTLPEEPYDQIITILLLLKLNAITEGKLHVNTISLRSGLSDDVKFIYDIDTASNHPFGNKSWWSECSTVMSDVAKTNKKEKIVKLIKQHCDWASVGLDWEQKEYKTTEIIFQDKQP*