Scaffold Ga0114977_10000059

Overview

Basic Information

• Taxon OID: 3300009158
• Scaffold ID: Ga0114977_10000059
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 73120
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (77.22%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F001464	Metagenome / Metatranscriptome	689	Y
F003408	Metagenome / Metatranscriptome	488	Y
F008245	Metagenome / Metatranscriptome	336	N
F038675	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1000005923	F000258	GGAG	MTNYKLDVTSDIRKYLWAQLKRHNVFDVHDYYIDSLDKEIIPIIPVQQQPELNQFLSGKKHIVYDKINMSYDSLWAICEEQILFCIYATDISEINEIRNLMVDLFRRMDESARDINRSGEISNTFKFHTITMIDISPVSPSEEIQGFLGTDIVLEVKYSRESNSAGRFI*
Ga0114977_1000005926	F003408	N/A	MTKTEEDKRIFLAAIQGIELGKDKEETEGPTFDDVRLKALGIEASKDDIVSLQGQIAAESGFGIGAGLGYSKE*
Ga0114977_1000005939	F001464	N/A	MARQKRNHVRKAFLYFFLNNKIHKVLRSSRAKDELVAWVYEDKKRVMYSYSQVEKNMESAYTMTQVASILNKHRVTIHDYILEGKVKTPQKIYSIGNGNDSKWSKYMFNQSDILGIHEYILDSGHSSELPSKAEILALLKTNLILYTKTAEGKFVPVWKAE*
Ga0114977_1000005954	F008245	AGG	MTEDKNTLELISNITEFNDLHEFMQDEHLDKALSIVVKLLMNPDVPSAKAPMLIMELQAMSTKFAVMSSVYSTIAKDKAGTVNNNKKNVYYSVKESIDKLVDALKYVVRYNS*
Ga0114977_1000005958	F038675	AGG	MKLYQSKDWLYRRYVVQKKSITEIAKECNVSAMTIQRHVEQFGLGKKK*
Ga0114977_1000005961	F000369	AGAAG	MTNEIEPAVHFDRMNKVVEELLKGNSATQIATLTGFSRKEVLEFIDEWKIVVHNDTNIRDRAREAISGADQHYAMLIKEAWKTVEDADTQGQLSVKSASLKLIADIETKRISMLQSIGVLENTQIASQIAETERKQEVLVGILKEVTAGCSKCKMDVAKRLSQITGIVESVVIEDANVV*
Ga0114977_1000005963	F000376	AGGA	MSEYQEKAKLCKCCSKHVPLPTVLREYEGITVCPTTFSNILEYKRIWQSFESRPPGSVRKHFSEYVQQIIESTIDKTKEQTI*