Scaffold Ga0114968_10105140

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10105140
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1721
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057984	Metagenome / Metatranscriptome	135	N
F091592	Metagenome	107	N
F102824	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_101051403	F057984	GGA	MRNNDSNHSVSGGLSILALGPRKKGKINMDGLGKIQILAERKVEMVELDIEVDDKTRDIVCHAALREITSDGDALFNYGFNQAIKRFIETKGKKCTKKSSNKKRSRR*
Ga0114968_101051404	F091592	GGA	MISAQFTRGDEDDRIKQLAGEVAIRAMRDIKLLQRRGVLDGLRLTKNRIGKLSDCNCYRDAKEVRSLVRDVKNGTVLFWCKVAGVRIDQSTLNRVIKRGIGNVN*
Ga0114968_101051405	F102824	N/A	MTSVRVQREEGKWRVTTMAGNPIGPRLWGAVPPNGLPSIEDLFDDKGMAQDAADLWNAYALWCQERSGKRKRR*