Scaffold Ga0114968_10031959

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10031959
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3515
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F015570	Metagenome	253	Y
F024504	Metagenome	205	N
F029673	Metagenome	187	N
F032957	Metagenome	178	Y
F079808	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1003195910	F004231	AGGAG	MSVKPKDFQHEICVYLEGIGECLVCFDILSPGDELDADHSDTYEIDFSVFDEDDKHITYDISKKQYNHCENKAMDEMRDITTQWHKEWETCFD*
Ga0114968_100319595	F032957	AGGAG	MDDFSPTTRMFSRSLREAYPKDYVNENIIEGPFYSAPNIHDIPVLFGLIAVLSMIAYALWRYF*
Ga0114968_100319596	F079808	GGAGG	MKELLETIYEDESNVYYCCYCLQPQGEKIGCCHENHFVEFKYLDNDCKQEIAQEILNG*
Ga0114968_100319597	F024504	AGGAG	MMDRKTVGITAPYRKSDYTYQDMLLDRIKDLEALVAKLEQRIKVLEAK*
Ga0114968_100319598	F015570	AGG	MNDKLDEAFDLLEFDVTDQIRNMEYLAEQKKISTGVTDGSIQRALVRDLTENLRTLPVSNDPLLLRNDVLEEVAVELAKLPFGDTAASYAAFVRAMKS*
Ga0114968_100319599	F029673	GGAG	LTKAEMVQHLRMAACNENTITGMSNAFDLGAEHERDVVSSIIFNMVKEQHLAQNIVDTIRVRE*