Scaffold Ga0114968_10019746

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10019746
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4651
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004475	Metagenome / Metatranscriptome	436	Y
F011077	Metagenome / Metatranscriptome	295	Y
F017788	Metagenome / Metatranscriptome	238	Y
F037701	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_100197462	F011077	AGG	MDTNLTWAEEDVNLWKGWTYSPEKNRYYFNDIGNESLAAFWADEFLNQAYS*
Ga0114968_100197463	F037701	GGA	MIRTKEWRVTNRSWLSVGFAPRRIGLGFHVDRFCFNIDFLWFWVTLEY*
Ga0114968_100197467	F017788	AGGA	MKKIIITSLLISLLIPNASAQAATKSLNTKGNKSSCKSIKTNYESEVMAKWSNGLASDQDVLKEIDLNIDILAAKQKPTTGKIKTTIASWITAEKNTKIALTSKNVEAITAAMNLKISSITNFDKLCKTIEK*
Ga0114968_100197469	F004475	GAGG	MTNWTEELNDKQKEDVWNFVVFTVKEIREQIARDIEATIPLWKSKGLLKSRRTQKAFEASAAIARGQNEQIDG*