Scaffold Ga0114968_10018147

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10018147
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4888
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007921	Metagenome / Metatranscriptome	342	Y
F026561	Metagenome / Metatranscriptome	197	Y
F066789	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1001814712	F026561	N/A	MSNFQKDDGTGMTPPPAAGAASGAVTSREATRKYPKQGIKPRMKIDINSHGIRRETSLDPKPKKTRPKKV*
Ga0114968_100181475	F066789	GAGG	MSDALCTKYGCDYQLDLDGQITCFNCGAMDDDMLPRRTYNDNDKFETQVDFE*
Ga0114968_100181479	F007921	N/A	MVGLYGKRILKMIDLLVNRIFRWDSLRNAIFDEVHMYDEVDKRIKEYKDEEPTNLTWSEGDTWYGWTYSKSKNRYYFDDIGNESLMGLWEDQWARESDETHHNNNKLNIDRN*