Scaffold Ga0114968

Basic Information
Taxon OID	3300009155 Open in IMG/M
Scaffold ID	Ga0114968_10016053 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009155 Open in IMG/M

Scaffold ID

Ga0114968_10016053 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5245
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5245

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (55.56%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006138	Metagenome / Metatranscriptome	380	Y
F009142	Metagenome	322	Y
F012433	Metagenome / Metatranscriptome	280	N
F019102	Metagenome	231	Y
F026543	Metagenome	197	N
F045612	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_100160531	F019102	N/A	MSISLDEELNSAFISPEKEFMGEKLAPYTEGSRLLLLQVRDDNDSSIYFIWSFIYMHIQIAKSRKEAIKLAWNRDLFREKIMDFIEGKTEADRDIATQIVSSILDEAQKGRVDVIPAPHQPDLGNA*
Ga0114968_100160532	F026543	N/A	MTEAYWGTTNIKVASAVASFGAKPRQLDPVTRTIKESGEVQATFWFEAGAGAEAKAEMERPWSEMRSDPESPIRYVRAALENRETFLGLLKRAVPVRVIQRGGQTLLISENATSEQRRAILKHL*
Ga0114968_100160533	F006138	GAGG	MAAVTIGTQGLSFGLVGEAGIGLVQSFSEARNVEKNEVRNNLGDIVAIGYFNATTSYSLSVAITGSYNVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVT*
Ga0114968_100160534	F012433	GAGG	MSADQVAELQERLSVVREAIARIEERQQSIISVIERHTSELAQWTAKINGKVDTLERESHTIKTKLWLVALVSGAVFSTIWELIKVRVFPR*
Ga0114968_100160535	F045612	GAGG	MSSLKWLEAEGYIEKFYDNNGDLCVRICEGAEDCEV*
Ga0114968_100160538	F009142	N/A	MNNSVQINVEDALENLLANIPNLNVYKTNRVGAKLFPSATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQEAFDSEYCSIFEAFYSETKPLFTKIQNNIVDTKVYTARITGQTPTIRTAKRAWQRGLKISLICTPSELDDGLRSLNFSQRQNSMYVAVI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114968_10016053

Overview

Ecosystem & Geography

Associated Families

Sequences